del gcAnndata del gcAnndata_f del gcAnndata_germ del gcAnndata_som
# Retain same cells for allele-specific analyses keep = gcAnndata.obs.Sample #keep.to_csv(".../keep.csv")gcAnndata.layers["counts"] = gcAnndata[gcAnndata.obs_names, gcAnndata.var_names].X.copy()
with pd.ExcelWriter('/users/k2142342/Lab_Sangrithi/working/Mahesh_Sangrithi/GermCell_SmartSeq2/FeatureCounts_OUT_9Feb23/GermCell_DEresults_9Feb23_bystagesex.xlsx') as writer: .to_excel(writer, sheet_name='Female') .to_excel(writer, sheet_name='Male')